Tutorials
Links
CHARMM. Molecular Dynamics Simulations
http://www.ch.embnet.org/MD_tutorial/
Introduction with applications through the CHARMM program.
Molecular Dynamics
http://cmm.info.nih.gov/modeling/guide_documents/molecular_dynamics_document.html
A tutorial published by the Center for Molecular Modeling of the U.S. National Institutes of Health.
Molecular Dynamics and Nanotechnology Tutorial Overheads
http://www.mse.ncsu.edu/CompMatSci/Tutorial/
Analytic Potentials and Molecular Dynamics Simulation by Donald W. Brenner. Part of the tutorial on Critical Enabling Technologies for Nanotechnology, Fifth Foresight Conference on Molecular Nanotechnology, November 5, 1997.
Molecular Dynamics Simulations of Polymers: An Introduction
http://www.che.utah.edu/~gdsmith/tutorials/tutorial1.ppt
Introduction with emphasis on polymer applications; powerpoint presentation.
Topics on Protein Dynamics
http://www.orcero.org/irbis/md/
Includes sections on molecular dynamics: introduction, advanced topics and output analysis.