Visualization
Links
OpenScience
http://www.openscience.org/links.php?section=56
A directory of links to free molecule viewers and editors.
DTMM
http://www.polyhedron.co.uk/dtmm/dtmm.html
Desktop Molecular Modeller: A simple program for constructing and viewing small molecules and proteins in 3D with some energy calculation/minimization capabilities. Run on any PC with Windows 9X/NT. Commercial software.
Grasp
http://honiglab.cpmc.columbia.edu/grasp/
A visualization and analysis program useful for the display and manipulation of the surfaces of molecules and their electrostatic properties. Commercial software.
OpenRasMol
Provided for the convenience of users and software developers of open source versions of RasMol.
Swiss-PdbViewer
http://www.expasy.ch/spdbv/mainpage.html
A free program for viewing and analyzing several proteins at the same time. Some energy minimzation and homology modeling features are also included.
VMD
http://www.ks.uiuc.edu/Research/vmd/
A free program for visualization and analysis of biological systems such as proteins, nucleic acids, and lipid bilayer assemblies.
Molymod Molecular Models
http://www.molecular-model.com/
Plastic molecular models for use in chemistry, biochemistry, molecular biology (DNA double helix), semiconductors and crystal lattice structures.
Labquip
http://www.labquip.clara.net/index.html
Plastic molecular models for constructing polypeptides and DNA molecules.
Historical Molecular Graphics
http://www.umass.edu/molvis/francoeur/movgallery/moviegallery.html
Digitized versions of 16mm movies of molecular structures produced in the early days of interactive molecular graphics.
Ymol
http://www.teoroo.mkem.uu.se/daniels/ymol.html
A free molecular visualization and animation program for the X window system. Creates images and movies, using either the built in renderer or povray. Still alpha.
Pymol
A free and flexible molecular graphics and modelling package which can be also used to generate animated sequences.
ProteinScope
ProteinScope is a free program to view and create animations of Protein Data Bank PDB files.
Biodesigner and iMol
A molecular viewer for Windows9x systems with sequence editor and protein builder. Free for academic use. Additionaly the iMol molecule viewer is available for Mac OS X systems.
RasMol
http://www.umass.edu/microbio/rasmol/
Molecular visualization freeware for proteins, DNA, and macromolecules. Freely available for Windows, Macintosh, and UNIX.
Molcular Model Kits
Plastic molecular structure models for research and education in science, intended especially for biochemistry.
Molda
A molecular model building program for displaying data from MM2, MOPAC, Gaussian94, charmm and amber4 outputs. Supported on most windows, mac and unix platforms.

